4.1. Folders

In the General tab the user can edit folders used to save, when requested, intermediate or final files processed by BioSumm.
Saved texts is the folder that stores files in txt-pseudo-xml format, as returned by the download and parsing block. User may want to save files in such a format for reusing them with BioSumm in order to produce a summary, or even just to obtain full text (when available) of such articles for other uses.
Summary folder is where summaries are saved after clicking on 'Download as pdf' or 'Download as html' button. In this folder there will be 'html' or 'pdf' subfolders (according to the button clicked by user). If cluster summary is shown (that means, 'Show cluster summary only' option is selected), this folder will contain two files for the currently selected cluster of documents, one ordered as sentences appears in the original text, the other one by the score of the sentences. If 'Show cluster summary only' is unchecked, for each file in the current cluster, there will be a file containing article's text, with the most important sentences highlighted.
The last option in the General tab is the dictionary file, which stores the domain words (i.e. gene and protein names). Changing dictionary file could be useful if the user wants to summarize articles in another domain, different from those of gene and protein interactions. A dictionary is a plain text file, containing one domain word for each row.


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